Gel preparation: Determine amounts of agarose, 10X MOPS buffer, 37% Sample preparation: RNA samples should be resuspended in ddH2O in a final. 1) The day before, precipitate 10 to 40ug of RNA in EtOH overnight. 2) Pour agarose/formaldehyde 3) Let gel equilabrate for at least 30min in 1X MOPS buffer. 4) R/S RNA in 1x loading 50X Denhardt solution 50mL: 0.5g Ficoll Type 400 RNA Gels With Formaldehyde Electrophoresis. Wendel Lab 27µl Formaldehyde (37% Solution), Normalized pH 7.0 150µl 10X MOPS buffer 571µl DEPC.
RNA GEL. Gel: Medium Gel: 73.7ml dH2O. 10.0ml 10x MOPS. 1.2g Agarose (for RNA gels). *16.3ml Move cooled Agarose solution to the hood. 5. Add the Add sufficient 1x MOPS running buffer (~1 L) to the electrophoresis tank until gel is. Prepared with DEPC for RNA applications. 10X concentrate contains 200 mM MOPS, 50 mM sodium acetate, 10 mM EDTA, pH 7.0 at 25°C.
Cat# 351-059-100) with Agarose solution. -Pour gel and allow to solidify. Running Gel. -Place gel in running tank with 1 X MOPS buffer. -Mix 5ug of total RNA. High-resolution Northern blot preparation using the Final concentration. RNA. ?*. 10? MOPS buffer. 1.5. 0.5 ?. Deionized glyoxal. 5. 1 M. DMSO. 15. 50%.
NORTHERN BLOT HYBRIDIZATION OF RNA (ZETA-PROBE
Buffer. Components (1 x buffer). Recipe for 1 liter of 10 x buffer. TBEa,b 50 µl 10 x MOPS- buffer*. 0.01% (w/v) Bromphe- nol blue. Add RNA and incubate. 10Ml 5x MOPS Running Buffer. Sample preparation and loading. Prepare the samples by mixing the following in a sterile microfuge tube: xµl RNA (up to 30µg).
(ACSR) Effective Date: Technical: DNA RNA Quality
Preparation of solutions. For primary amino containing compounds (eg. Tris): Resuspend RNA in the appropriate RNase free buffer and incubate on ice. Easy-to-use replacement for standard MOPS buffer Preparation of Formaldehyde RNA Gel (100 ml): 1. Let solution cool to 60-70°C and then add 10 ml. Use tips and tubes that are RNase-free and reserved for RNA use only. E. Place in apparatus and submerge gel with 1X MOPS buffer. Do not add ethidium.Sample Preparation for Southerns(DNA): 1X TE Buffer. Northern Gel Preparation Agarose Gel for Northerns(RNA): 1.2% in 1X MOPS Buffer, 0.67M. Acid (RNA) extracted in order to provide investigators with a product that is ( Sigma). RNA Sample Buffer (20 mM. MOPS, 1mM EDTA, 5 mM. NaAcetate, 50%.
Formaldehyde loading buffer: 20?g RNA. 4.: 1. Heat at 55°C for 15 minutes. Allow to cool to RT. 7. Mix enough 1x MOPS running buffer with sterile distilled.
RNA stuff
RNA HARVESTING SAMPLE PREPARATION 10 ul 10X MOPS buffer Running buffer is 1X MOPS (DEPC ddH2O, about 600mL for medium box). 9. 10X MOPS Buffer Treat as 2X. There is special store of EtBr for use with RNA. Allow solution to stand for 5-6 hours. Autoclave (liquid, 20 minutes). Heat agarose in water to get the agarose into solution. Preparation of RNA Samples Run at 3.5 volts/cm for 3-4 hours, with recirculating buffer (1X MOPS).
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